The Spanish international picked up his third booking of the group stage, to trigger an automatic one-match ban, for time wasting in the 90th minute in Cyprus.
However, he will be hit with an extra game ban if found guilty of breaking article 15 of UEFA’s disciplinary regulations when his case is heard on December 7.
Madrid have already secured their place in the last 16 behind Tottenham Hotspur in Group H with nothing riding on their final group game at home to Borussia Dortmund on December 6.
It is not the first time Madrid have been reprimanded by UEFA for provoking suspensions in the Champions League.
In 2010 Xabi Alonso and Sergio Ramos were charged for getting sent off in the final stages of a 4-0 win at Ajax to miss a meaningless match against Auxerre.
On that occasion the pair escaped an extra ban but were fined 20,000 euros each and coach Jose Mourinho was handed a two-match suspended ban for orchestrating their dismissals.
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